2017


41. Ong, L.L.; Hanikel, N.; Yaghi, O.K.; Grun, C.; Strauss, M.T.; Bron, P.; Lai-Kee-Him, J.; Schueder, F.; Wang, B.; Wang, P.; Kishi, J.Y.; Myhrvold, C.A.; Zhu, A.; Jungmann, R.; Bellot, G.; Ke, Y.; Yin, P.; Programmable self-assembly of three-dimensional nanostructures from 10^4 unique components. Nature (Accepted).

40. Lan, X.; Su, Z.; Zhou, Y.; Meyer, T.; Ke, Y.; Wang, Q.; Chiu, W.; Liu, N.; Zou, S.; Yan, H.; Liu, Y.; Programmable Supra-Assembly of DNA Surface Adapter for Tunable Chiral Directional Self-Assembly of Gold Nanorods. Angewandte Chemie (in press).

39. Jiang, T.; Meyer, T.; Modlin, C.; Zou, X.; Conticello, V.P.#; Ke, Y.#; Structurally Ordered Nanowire Formation from Co-Assembly of DNA Origami and Collagen-Mimetic Peptides. Journal of the American Chemical Society 2017, 139(40), 14025.

38. Salas, D.; Gall, A. L.; Fiche, J.B.; Valeri, A.; Ke, Y.; Bron, P.; Bellot, G.; Nollmann, M; Template-free reconstruction of nanomolecular structures fromnanoscopy images with isotropic 3D resolution. Proceedings of the National Academy of Sciences 2017, 114(35), 9273-9278. [Link]

37. Song, J.; Li, Z.;, Wang, P.; Meyer, T.; Mao, C.; Ke, Y.; Reconfiguration of DNA Molecular Arrays Driven by Information Relay. Science 2017, doi: 10.1126/science.aan3377. [Link]

36. Wang, P.; Meyer, T.A.; Pan, V.; Dutta, P.K.; Ke, Y.; The Beauty and Utility of DNA Origami. Chem 2017, 2(3), 239. [Link]

35. Zhan, P.; Dutta, P.K.; Wang, P.; Song G.; Dai, M.; Zhao, S.; Wang, Z.; Yin, P.; Zhang, W.; Ding, B.; Ke, Y.; Reconfigurable Three-Dimensional Gold Nanorod Plasmonic Nanostructures Organized on DNA Origami Tripod. ACS Nano 2017, 11(2), 1172-1179. doi:10.1021/acsnano.6b06861. [Link]

2016

34. Wang, P.; Gaitanaros, S.; Lee, S.; Bathe, M.; Shih, W. M.; Ke, Y.; Programming Self-Assembly of DNA Origami Honeycomb Two-Dimensional Lattices and Plasmonic Metamaterials. Journal of the American Chemical Society 2016, 138(24), 7733 [Link]

33. Urban, M.J.; Dutta, P.K.; Wang, P.; Duan, X.; Shen, X.; Ding, B.; Ke, Y.; Liu, N.; Plasmonic Toroidal Metamolecules Assembled by DNA Origami. Journal of the American Chemical Society 2016, 138(17), 5495. [Link]

32. Ke, Y.; Meyer, T.; Shih, W.M.; Bellot, G.; Regulation at a distance of biomolecular interactions using a DNA origami nanoactuator. Nature Communications. 2016, 18(7),10935. doi: 10.1038/ncomms10935. [Link]

31. Jiang, H.; Pan, V.; Vivek, S.; Weeks, E. R.; Ke, Y.; Programmable DNA Hydrogels Assembled from Multi-Domain DNA Strands. ChemBioChem 2016, 17, 1156–1162. [Link]

30. Shen, C.; Lan, X.; Lu, X.; Meyer, T. A.; Ni, W.; Ke, Y.; Wang, Q.; Site-Specific Surface Functionalization of Gold Nanorods Using DNA Origami Clamps. Journal of the American Chemical Society 2016, 138(6), 1764-1767. [Link]

2015

29. Dutta, P.: Meyer, T. A.; Ke, Y.; Nucleic Acid Based Nanoreactors—Toward the Study of Multienzymatic Pathways. Advanced Science, Engineering and Medicine 2015, 7(12), 1009-1018. [Link]

28. Tian, Y.; Wang, T.; Liu, W.; Xin, H.; Li, H.; Ke, Y.; Shih, W.; Gang, O. Prescribed nanoparticle cluster architectures and low-dimensional arrays built using octahedral DNA origami frames. Nature Nanotechnology 2015, 10(7), 637-644. [Link]

27. Lan, X.; Lu, X.; Shen, C.; Ke, Y.; Ni, W.; & Wang, Q. Au Nanorod Helical Superstructures with Designed Chirality. Journal of the American Chemical Society 2015, 137(1), 457-462. [Link]

2014

26. Ke, Y.; Ong, L. L.; Sun, W.; Song, J.; Dong, M.; Shih, W. M.; Yin, P. DNA Brick Crystals with Prescribed Depth. Nature Chemistry 2014, 6, 994-1002. [Link]

25. Ke, Y. Designer three-dimensional DNA architectures. Current Opinions in Structural Biology 2014, 27C, 122-128. [Link]

24. Iinuma, R.; Ke, Y.; Jungmann, R.; Schlichthaerle, T.; Woehrstein, J.; Yin, P. Polyhedra Self-Assembled from DNA Tripods and Characterized with 3D DNA-PAINT. Science 2014, 344, 65–69. [Link]
•Media coverage: Wyss News Release, Nanotechnology Now, Veooz, Brunch News, Science Daily, Machines Like Us, Nanowerk, Harvard Gazette, Phys.org, Biomedicine, Science Codex, The Emory Health Sciences Research Blog, Tech Times, e! Science News, Microscopy and Analysis, HNGN, USA News, Newsfiber, Fierce Drug Delivery, Nolet, w8.ns

23. Nickels, P.; Ke, Y.; Jungmann, R.; Smith, D.; Leichsenring, M.; Shih, W.; and Liedl, T.; Hogberg, B. DNA Origami Structures Directly Assembled from Intact Bacteriophages. Small 2014, 10, 1765–1769. [Link]

Before 2014

22. Wei, B.; Dai, M.; Myhrvold, C.; Ke, Y.; Jungmann, R.; Yin, P. Design Space for Complex DNA Structures. Journal of the American Chemical Society 2013, 135, 18080-18088. [Link]

21. Jin, Z.; Sun, W.; Ke, Y.; Shih, C.; Paulus, G. L. C.; Wang, Q. H.; Mu, B.; Yin, P.; Strano, M. S. Metalized DNA Nanolithography for Encoding and Transferring Spatial Information for Graphene Patterning. Nature Communications 2013, 4, 1663-1671. [Link]
•Media coverage: MIT new release, SciTech Daily, Electronic News, ExtremeTech, Paste Magazine, Physics Buzz, The Verge, Digital Manufacturing Report

20. Ke, Y.; Ong, L. L.; Shih, W. M.; Yin, P. Three-Dimensional Structures Self-Assembled from DNA Bricks. Science 2012, 338, 1177-1183. [Link]
•Academic commentaries on this paper: “LEGO-like DNA Structures”, Gothelf, K. V. Science 2012, 338, 1159-1160. [Link]
•Highlighted on Science cover November 30th issue, Science photo slideshow.•Media coverage: Wyss Institute's press release, Harvard Gazette, NBC News Video, NBC News, LA Times, Boston.com, Discover Magazine, Discovery News, CBS42.com, The Scientist, Space.com, BioTechniques, Bio-Medicine, Genetic Engineering & Biotechnology News, Popular Mechanics, R&D Magazine, Chemistry World, Phys.org, TechNewsDaily, Science Daily, Extreme Tech, e! Science News, Science Codex, Lab Spaces, Genome Web, IvanHoe.com, Lukor.com, Terra Brasil, French Tribune, Spanish Scientific News Agency, Medindia, Wissenslogs, Stdaily.com.

19. Ke, Y.; Bellot, G.; Voigt, N.; Fradkov, E. Two Design Strategies for Enhancement of Multilayer–DNA-Origami Folding: Underwinding for Specific Intercalator Rescue and Staple-Break Positioning. Chemical Science 2012, 3, 2587–2597. [Link]

18. Ke, Y.; Voigt, N. V.; Gothelf, K. V.; Shih, W. M. Multilayer DNA Origami Packed on Hexagonal and Hybrid Lattices. Journal of the American Chemical Society 2012, 134, 1770–1774. [Link]

17. Ke, Y.; Douglas, S. M.; Liu, M.; Sharma, J.; Cheng, A.; Leung, A.; Liu, Y.; Shih, W. M.; Yan, H. Multilayer DNA Origami Packed on a Square Lattice. Journal of the American Chemical Society 2009, 131, 15903–15908.

16. Ke, Y.; Sharma, J.; Liu, M.; Jahn, K.; Liu, Y.; Yan, H. Scaffolded DNA Origami of a DNA Tetrahedron Molecular Container. Nano Letters 2009, 9, 2445–2447.

15. Gerdon, A. E.; Oh, S. S.; Hsieh, K.; Ke, Y.; Yan, H.; Soh, H. T. Controlled Delivery of DNA Origami on Patterned Surfaces. Small 2009, 5, 1942–1946.

14. Lin, C.; Ke, Y.; Li, Z.; Wang, J. H.; Liu, Y.; Yan, H. Mirror Image DNA Nanostructures for Chiral Supramolecular Assemblies. Nano Letters 2009, 9, 433–436.

13. Ke, Y.; Lindsay, S.; Chang, Y.; Liu, Y.; Yan, H. Self-Assembled Water-Soluble Nucleic Acid Probe Tiles for Label-Free RNA Hybridization Assays. Science 2008, 319, 180–183.
•Academic commentaries on this paper: “Tiny tiles, tiny targets”, Giljohann, D. A.; Mirkin, C. Nature Biotechnology 2008, 26, 299–300. “An origami chip of DNA”, Kaganman, I. Nature Methods 2008, 5, 222.
•Highlighted on Arizona State University homepage.
•Media coverage: Reuters, Sciencedaily.com, Physorg.com, Eurekalert.org, Nextbigfuture.com, Biosingularity.com, Nanotech-now.com, Medicalnewstoday.com, Internetchemie.info, and many other news agencies.

12. Ke, Y.; Nangreave, J.; Yan, H.; Lindsay, S.; Liu, Y. Developing DNA Tiles for Oligonucleotide Hybridization Assay with Higher Accuracy and Efficiency. Chemical Communications 2008, 5622–5624.

11. Rinker, S.*; Ke, Y.*; Liu, Y.; Chhabra, R.; Yan, H. Self-assembled DNA Nanostructures for Distance-Dependent Multivalent Ligand-Protein Binding. Nature Nanotechnology 2008, 3, 418–422.

10. Sharma, J.; Ke, Y.; Lin, C.; Chhabra, R.; Wang, Q.; Nangreave, J.; Liu, Y.; Yan, H. DNA-Tile-Directed Self-Assembly of Quantum Dots into Two-Dimensional Nanopatterns. Angewandte Chemie 2008, 47, 5157–5159.

9.Wang, Q.; Liu, Y.; Ke, Y.; Yan, H. Quantum Dot Bioconjugation during Core-Shell Synthesis. Angewandte Chemie 2008, 47, 316–319.

8.Li, Z.; Ke, Y.; Lin, C.; Yan, H.; Liu, Y. Subtractive Assembly of DNA Nanoarchitectures Driven by Fuel Strand Displacement. Chemical Communications 2008, 4318–4320.

7.Lin, C.; Ke, Y.; Liu, Y.; Mertig, M.; Gu, J.; Yan, H. Functional DNA Nanotube Arrays: Bottom-Up Meets Top-Down. Angewandte Chemie 2007, 46, 6089–6092.

6.Chhabra, R.; Sharma, J.; Ke, Y.; Liu, Y.; Rinker, S.; Lindsay, S.; Yan, H. Spatially Addressable Multiprotein Nanoarrays Templated by Aptamer-Tagged DNA Nanoarchitectures. Journal of the American Chemical Society 2007, 129, 10304–10305.
•Highlighted by the editors of Nature Nanotechnology as “Research Highlight”: (http://www.nature.com/nnano/reshigh/2007/0807/full/nnano.2007.287.html).

5.Ke, Y.; Liu, Y.; Zhang, J.; Yan, H. A Study of DNA Tube Formation Mechanisms Using 4-, 8-, and 12-Helix DNA Nanostructures. Journal of the American Chemical Society 2006, 128, 4414–4421.

4.Zhang, J.; Liu, Y.; Ke, Y.; Yan, H. Periodic Square-Like Gold Nanoparticle Arrays Templated by Self-Assembled 2D DNA Nanogrids on a Surface. Nano Letters 2006, 6, 248–251.
•Featured in physorg.com: (http://www.physorg.com/news11996.html) and the top 10 most cited papers published in Nano Lett. in 2006

3.Lund, K.; Williams, B.; Ke, Y.; Liu, Y.; Yan, H. DNA Nanotechnology: a Rapidly Evolving Field. Current Nanoscience 2006, 2, 113–122.

2.Sharma, J.; Chhabra, R.; Liu, Y.; Ke, Y.; Yan, H. DNA-Templated Self-Assembly of Two-Dimensional and Periodical Gold Nanoparticle Arrays. Angewandte Chemie 2006, 45, 730–735.

1.Liu, Y.; Ke, Y.; Yan, H. Self-Assembly of Symmetric Finite-Size DNA Nanoarrays. Journal of the American Chemical Society 2005, 127, 17140–17141.
•Highlighted in Nature Material Science and Nanotechnology as a nanozone news: (http://www.nature.com/materals/nanozone/news/060105/potal/m060105-2.html)